2014  Igulu MM, Nagelkerken I, Dorenbosch M, Grol MG, Harborne AR, Kimirei IA, Mumby PJ, Olds AD, Mgaya YD (2014) Mangrove Habitat Use by Juvenile Reef Fish: Meta-Analysis Reveals that Tidal Regime Matters More than Biogeographic Region. PloS one 9:e114715    
2014  Loiselle S., Cozar A., Adgo E., Ballatore T., Chavula G., Descy J.-P, Harper D., Kansiime F., Kimirei I.A., Langenberg V., Ma R., Sarmento H., Odada, E. (2014) Decadal Trends and Common Dynamics of the Bio-Optical and Thermal Characteristics of the African Great Lakes. PLoS ONE 9(4): e93656. doi:10.   
2014  Mahongo, S.B. Annual to Inter-Decadal Variability in Surface Air Temperature Along the Coast of Tanzania, Western Indian Ocean Journal of Marine Science, 13(2): 109 – 124.   
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2014  Nikaido M., Ota T., Hirata T., Suzuki H., Satta Y., Aibara M., Mzighani S.I., Sturmbauer C., Hagino-Yamagishi K. and Okada N. 2014. Multiple episodic evolution events in V1R receptor genes of East-African cichlids. Genome Biology and Evolution (GBE) 6(5):1135-1144. DOI:10.1093/gbe/evu086.    
2014  Mahongo, SB & Shaghude YW Modelling the dynamics of the Tanzanian coastal waters. Journal of Oceanography and Marine Science, 5(1): 1-7   
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2013  Mahongo SB & Francis J. Analysis of rainfall variations and trends in coastal Tanzania. Western Indian Ocean Journal of Marine Science, 11(2): 121-133.   
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2013  Genner, M.J., Connell, E., Shechonge, A., Smith, A., Swanstrom, J., Mzighani, S., Mwijage, A., Ngatunga, B.P. and Turner, G.F. (2013) Nile tilapia invades the Lake Malawi catchment. African Journal of Aquatic Sciences. 38, supp. 1, 85-90.   
2013  Kimirei I.A., Nagelkerken I., Mgaya Y.D., Huijbers, C.M. (2013). The Mangrove Nursery Paradigm Revisited: Otolith Stable Isotopes Support Nursery-to-Reef Movements by Indo- Pacific Fishes. PLoS ONE 8(6): e66320. doi:10.1371/journal.pone.0066320    
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2013  Kimirei, I. A., Nagelkerken, I., Trommelen, M., Blankers, P., Hoytema, N., Hoeijmakers, D., Huijbers, C. M., Mgaya, Y. D., Rypel, A. L. (2013). What Drives Ontogenetic Niche Shifts of Fishes in Coral Reef Ecosystems? Ecosystems 16: 783-796. DOI: 10.1007/s10021-013-9645-4    
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2013  Mahongo S & Shaghude Y. Investigating the effect of winds and storms on shoreline erosion along the coast of Tanzania. Journal of Shipping and Ocean Engineering, 3(1-2): 61-69.   
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2013  Mahongo SB & Deo MC. Using neural networks to forecast sea surface temperature anomalies in the western Indian Ocean. International Journal of Ocean and Climate Systems, 4(2): 133-150.   
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2013  Takeda M., Kasumi, J., Mizoiri S., Aibara M., Mzighani S.I., Sato T., Terai Y., Okada N. and Tachida H. 2013. Genetic structure of pelagic and littoral cichlid fishes from Lake Victoria. PLOS ONE 8(9): e74088. DOI:10.1371/journal.pone.0074088.    
2013  Genner M., Connell E., Shechonge A., Smith A., Swanstrom J., Mzighani S., Mwijage A., Ngatunga B. and Turner G. 2013. Nile tilapia invades the Lake Malawi catchment. African Journal of Aquatic Science 38 (Sup1imentary): 85-90.    
2013  Nikaido M., Noguchi H., Nishihara H., Toyoda A., Suzuki Y., Kajitani R., Suzuki H., Okuno M., Aibara M., Ngatunga B. P., Mzighani S. I., Kalombo H. W. J., Masengi K. W. A., Tuda J., Nogami S., Maeda R., Iwata M., Abe Y., Fujimura K., Okabe M., Amano T., Maeno A., Shiroishi T., Itoh T., Sugano S., Kohara Y., Fujiyama A. and Okada N. 2013. Coelacanth genomes reveal signatures for evolutionary transition from water to land. Genome Research 07/2013; DOI:10.1101/gr.158105.113.    
2013  Sweke E.A., Assam J.M., Matsuishi T. and Chande A.I. (2013). Fish Diversity and Abundance of Lake Tanganyika: Comparison between Protected Area (Mahale Mountains National Park) and Unprotected Areas. International Journal of Biodiversity 2013: 1–10    
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2012  Ngupula, G. W., Ezekiel, C. N., Kimirei, I. A., Mboni, E., and Kashindye, B. (2012) Physical and chemical characteristics of the Tanzanian inshore and offshore waters of Lake Victoria in 2005-2008. African Journal of Aquatic Science 37(3):339-345    
2012  Mahongo SB, Francis J & Osima SE. Wind patterns of coastal Tanzania: Their variability and trends. Western Indian Ocean Journal of Marine Science, 10 (2): 107-120.   
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2012  Miyagi R., Terai Y., Aibara M., Sugawara T., Imai H., Tachida H., Mzighani S.I., Okitsu T., Wada A., and Okada N. 2012. Correlation between nuptial colors and visual sensitivities tuned by opsins leads to species richness in sympatric Lake Victoria cichlid fishes. Molecular Biology and Evolution 29(11): 3281-3296.    
2011  Shoko, A. P. A., Matola, H. D. Mzighani, S. and Mahika, G. C. 2011. Fishpond Performance of Nile Tilapia Oreochromis niloticus (Linnaeus, 1758) in the Lake Victoria Basin, Tanzania. Journal of Aquaculture in the Tropics: 26 (1-2). 17-28   
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2011  Shoko, A.P., F.M. Urasa, and Ndaro, S.G.M. 2011. The Effect of Different Dietary Proportions of Cotton Seed Cake and Soybean Meal on the Growth Performance of Tilapia Fry, Oreochromis Variabilis. Journal of Association of Zoologists, India. 2(1) 8-24   
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