2013  Kimirei, I. A., Nagelkerken, I., Trommelen, M., Blankers, P., Hoytema, N., Hoeijmakers, D., Huijbers, C. M., Mgaya, Y. D., Rypel, A. L. (2013). What Drives Ontogenetic Niche Shifts of Fishes in Coral Reef Ecosystems? Ecosystems 16: 783-796. DOI: 10.1007/s10021-013-9645-4    
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2012  Mahongo SB, Francis J & Osima SE. Wind patterns of coastal Tanzania: Their variability and trends. Western Indian Ocean Journal of Marine Science, 10 (2): 107-120.   
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2012  Ngupula, G. W., Ezekiel, C. N., Kimirei, I. A., Mboni, E., and Kashindye, B. (2012) Physical and chemical characteristics of the Tanzanian inshore and offshore waters of Lake Victoria in 2005-2008. African Journal of Aquatic Science 37(3):339-345    
2012  Miyagi R., Terai Y., Aibara M., Sugawara T., Imai H., Tachida H., Mzighani S.I., Okitsu T., Wada A., and Okada N. 2012. Correlation between nuptial colors and visual sensitivities tuned by opsins leads to species richness in sympatric Lake Victoria cichlid fishes. Molecular Biology and Evolution 29(11): 3281-3296.    
2011  Shoko, A. P., A. Getabu, G. Mwayuli and Y.D. Mgaya, 2011. Growth Performance, Yields and Economic Benefits of Nile Tilapia Oreochromis niloticus and Kales Brassica oleracea Cultured under Vegetable-Fish Culture Integration. Tanzania Journal of Science: 37:37-48   
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2011  Shoko, A.P., F.M. Urasa, and Ndaro, S.G.M. 2011. The Effect of Different Dietary Proportions of Cotton Seed Cake and Soybean Meal on the Growth Performance of Tilapia Fry, Oreochromis Variabilis. Journal of Association of Zoologists, India. 2(1) 8-24   
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2011  Shoko, A. P. A., Matola, H. D. Mzighani, S. and Mahika, G. C. 2011. Fishpond Performance of Nile Tilapia Oreochromis niloticus (Linnaeus, 1758) in the Lake Victoria Basin, Tanzania. Journal of Aquaculture in the Tropics: 26 (1-2). 17-28   
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2011  Shoko A.P.A., Matola H.D., Mzighani S. and Mahika G.C. 2011. Fishpond perfomance of Nile Tilapia Oreochromis niloticus (Linnaeus, 1758) in the Lake Victoria Basin, Tanzania. Journal of Aquaculture in the Tropics 26: 1–12.    
2011  Nikaido M., Sasaki T., Emerson J. J., Aibara M., Mzighani S.I., Budeba Y.L., Ngatunga B.P., Iwata M., Abe Y., Li WH., Okada N. 2011. Genetically distinct coelacanth population off the northern Tanzanian coast. Proceedings of the National Academy of Sciences (PNAS) 108 (44): 18009–18013.    
2011  Kimirei, I. A.; Nagelkerken, I., Griffioen, B., Wagner, C., and Mgaya, Y. D. (2011). Ontogenetic habitat use by mangrove/seagrass-associated coral reef fishes shows flexibility in time and space. Estuarine, coast and Shelf Science 92:47-58    
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2011  Ishengoma, E.B., Jiddawi, N.S., Tamatamah, R.A. and Mmochi, A.J., 2011. Wild Black-lip Pearl Oyster (Pinctada margaritifera) Spat Collection in Tanzania. Western Indian Ocean J. Mar. Sci., 10 (1): 49-57   
2010  Shoko, A. P., Oenga, D N., Mgaya, Y. D. and Mbahinzireki,G. 2010. The Potential of Rivers as Refugia for Indigenous Fish Species of Lake Victoria, East Africa: A Case Study for Labeo victorianus. Sarnissa Newletter.   
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2010  Oenga, D. N., Mgaya, Y. D., Mbahinzireki,G, Shoko, A. P., and Nyanchiri, E. 2010. Evaluation of Yields and Growth Performance of Nile tilapia (Oreochromis niloticus) with Ningu (Labeo victorianus) and African catfish (Clarias gariepinus) in Earthen Pond, Kenya. Journal of National Aquatic Resources Research and Development Agency of Srilanka. 40: 33-47   
2010  Descy, J.-P., Tarbe, A.-L., Stenuite, S., Pirlot, S., Stimart, J., Vanderheyden, J., Leporcq, B., Stoyneva, M.P., Kimirei, I. A., Sinyinza, and D., Plisnier, P.-D. (2010). Drivers of phytoplankton diversity in Lake Tanganyika. Hydrobiologia 653:29-44    
2010  Mahongo SB & Francis J. Monthly variations in sea level at the Island of Zanzibar. Western Indian Ocean Journal of Marine Science, 9 (1): 1-14.   
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2010  Mzighani S.I., Nikaido M., Takeda M., Seehausen O., Budeba Y.L., Ngatunga B.P., Katunzi E.F.B., Aibara M., Mizoiri S., Sato T., Tachida H. and Okada N. 2010. Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria—An analysis based on SINEs and mitochondrial DNA. Gene 450: 39–47.    
2009  Rutaisire, J., Charo-Karisa, H., Shoko, A. P. and Nyandat, B. 2009. Aquaculture for increased fish production in East Africa. African Journal of Tropical Hydrobiology and Fisheries 12: 19-22. ISBN 9970-713-06-6.   
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2009  Maeda K., Takeda M., Kamiya K., Aibara M., Mzighani S.I., Nishida M., Mizoiri S., Sato T., Terai Y., Okada N. and Tachida H. 2009. Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma. Gene 441: 67–73.    
2009  Mzighani S.I., Nikaido M., Takeda M., Seehausen O., Budeba Y.L., Ngatunga B.P., Katunzi E.F.B., Aibara M., Mizoiri S., Sato T., Tachida H. and Okada N. 2009. Lake Victoria Haplochromis laparogramma group of cichlid fishes D-loop nucleotide sequences. GenBank Acc. No. AB522158–AB522389.    
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2009  Mahongo SB, The changing global climate and its implication on sea level trends in Tanzania and the western Indian Ocean. Western Indian Ocean Journal of Marine Science, 8 (2): 147-159.   
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