2011  Shoko, A. P., A. Getabu, G. Mwayuli and Y.D. Mgaya, 2011. Growth Performance, Yields and Economic Benefits of Nile Tilapia Oreochromis niloticus and Kales Brassica oleracea Cultured under Vegetable-Fish Culture Integration. Tanzania Journal of Science: 37:37-48   
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2011  Shoko A.P.A., Matola H.D., Mzighani S. and Mahika G.C. 2011. Fishpond perfomance of Nile Tilapia Oreochromis niloticus (Linnaeus, 1758) in the Lake Victoria Basin, Tanzania. Journal of Aquaculture in the Tropics 26: 1–12.    
2011  Nikaido M., Sasaki T., Emerson J. J., Aibara M., Mzighani S.I., Budeba Y.L., Ngatunga B.P., Iwata M., Abe Y., Li WH., Okada N. 2011. Genetically distinct coelacanth population off the northern Tanzanian coast. Proceedings of the National Academy of Sciences (PNAS) 108 (44): 18009–18013.    
2011  Kimirei, I. A.; Nagelkerken, I., Griffioen, B., Wagner, C., and Mgaya, Y. D. (2011). Ontogenetic habitat use by mangrove/seagrass-associated coral reef fishes shows flexibility in time and space. Estuarine, coast and Shelf Science 92:47-58    
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2010  Shoko, A. P., Oenga, D N., Mgaya, Y. D. and Mbahinzireki,G. 2010. The Potential of Rivers as Refugia for Indigenous Fish Species of Lake Victoria, East Africa: A Case Study for Labeo victorianus. Sarnissa Newletter.   
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2010  Oenga, D. N., Mgaya, Y. D., Mbahinzireki,G, Shoko, A. P., and Nyanchiri, E. 2010. Evaluation of Yields and Growth Performance of Nile tilapia (Oreochromis niloticus) with Ningu (Labeo victorianus) and African catfish (Clarias gariepinus) in Earthen Pond, Kenya. Journal of National Aquatic Resources Research and Development Agency of Srilanka. 40: 33-47   
2010  Mzighani S.I., Nikaido M., Takeda M., Seehausen O., Budeba Y.L., Ngatunga B.P., Katunzi E.F.B., Aibara M., Mizoiri S., Sato T., Tachida H. and Okada N. 2010. Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria—An analysis based on SINEs and mitochondrial DNA. Gene 450: 39–47.    
2010  Descy, J.-P., Tarbe, A.-L., Stenuite, S., Pirlot, S., Stimart, J., Vanderheyden, J., Leporcq, B., Stoyneva, M.P., Kimirei, I. A., Sinyinza, and D., Plisnier, P.-D. (2010). Drivers of phytoplankton diversity in Lake Tanganyika. Hydrobiologia 653:29-44    
2010  Mahongo SB & Francis J. Monthly variations in sea level at the Island of Zanzibar. Western Indian Ocean Journal of Marine Science, 9 (1): 1-14.   
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2009  Rutaisire, J., Charo-Karisa, H., Shoko, A. P. and Nyandat, B. 2009. Aquaculture for increased fish production in East Africa. African Journal of Tropical Hydrobiology and Fisheries 12: 19-22. ISBN 9970-713-06-6.   
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2009  Mzighani S.I., Nikaido M., Takeda M., Seehausen O., Budeba Y.L., Ngatunga B.P., Katunzi E.F.B., Aibara M., Mizoiri S., Sato T., Tachida H. and Okada N. 2009. Lake Victoria Haplochromis laparogramma group of cichlid fishes D-loop nucleotide sequences. GenBank Acc. No. AB522158–AB522389.    
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2009  Maeda K., Takeda M., Kamiya K., Aibara M., Mzighani S.I., Nishida M., Mizoiri S., Sato T., Terai Y., Okada N. and Tachida H. 2009. Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma. Gene 441: 67–73.    
2009  Mahongo SB, The changing global climate and its implication on sea level trends in Tanzania and the western Indian Ocean. Western Indian Ocean Journal of Marine Science, 8 (2): 147-159.   
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2009  Plisnier, P.-D., Mgana, H., Kimirei, I. A., Chande, A. I, Makasa, L., Chimanga, J., Zulu, F., Cocquyt, C., Horion, S., Bergamino, N., Naithani, J., Deleersnijder, E., Andre´, L., Descy, J.-P., Cornet, Y., (2009). Limnological variability and pelagic fish abundance (Stolothrissa tanganicae and Lates stappersii) in Lake Tanganyika. Hydrobiologia 625: 117-134   
2009  Semesi, I.S, Kangwe, J., Bjork, M. (2009). Alterations in seawater pH and CO2 affect calcification and photosynthesis in the tropical coralline alga, Hydolithon sp. (Rhodophyta). Estuarine, Coastal and Shelf Science, 84: 337-341.   
2008  Mizoiri S., Aibara M., Takahashi K., Sato T., Nikaido M., Watanabe M., Seehausen O., Witte F, van Oijen M.J.P., Bwathondi P.O.J, Ngatunga B.P., Katunzi E.F.B., Mrosso H.D.J., Mzighani S.I., Nakashio M. and Okada N. 2008. Live Cichlids in the Southern Lake Victoria: On-going Speciation. Tokyo Tech Press, Tokyo. 273pp.    
2008  Kimirei, I. A., Mgaya, Y. D., and Chande, A. I. (2008) Changes in species composition and abundance of commercially important pelagic fish species in Kigoma area, Lake Tanganyika, Tanzania. Aquatic Ecosystem Health and Management 11:29-35    
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2007  Kimirei, I. A. and Mgaya, Y. D. (2007) Influence of environmental factors on seasonal changes in clupeid catches in the Kigoma area of Lake Tanganyika. African Journal of Aquatic Sciences 32: 291-298    
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2006  Kimirei, I. A. and Mgaya, Y. D. (2006) Assessment of Lates stappersii (Centropomidae) stock in lift-net fishery in Lake Tanganyika, Kigoma, Tanzania.Tanzania Journal of Science 32:1-12   
2006  Gullström, M., Lundén, B., Bodin, M., Kangwe, J., Öhman, M.C., Mtolera, M.S.P. and Björk, M. (2006). Assessment of vegetation changes in seagrass communities of tropical Chwaka Bay (Zanzibar) using Satellite Remote Sensing. Estuarine, Coastal and Shelf Science 67, 399-408.